The SIB Training Group ensures that the next generation of bioinformaticians and life scientists make the best of the latest advances in the field of computational biology.
Focus on the group's mission
The SIB Training Group coordinates the institute’s bioinformatics training and course offer. Throughout its activities, it ensures that the next generation of bioinformaticians and life scientists make the best of the latest advances in computational biology.
Addressing training needs
From in-person and streamed classes to openly accessible recordings and e-learning modules, a range of regularly updated contents and topics are provided. They are designed to closely match the bioinformatics training needs of all life science actors, from the academia or the private sector, including PhD students, postdoctoral researchers and health professionals. Discover all upcoming courses and stay informed, and if you need training in an area of bioinformatics that we are not currently covering, please This email address is being protected from spambots. You need JavaScript enabled to view it..
International collaborations
The Training Group collaborates in pan-European and international training projects, together with the broader bioinformatics community of ELIXIR, GOBLET and ISCB. For instance, the Training group is co-leading the following projects:
BY-COVID WP6: the work package coordinating the training and capacity-building of COVID-19 Data Hub users and data providers.
ELIXIR-CONVERGE WP2: the work package building a programme in Data Management across ELIXIR Nodes.
Train the trainer: the ELIXIR and GOBLET programme which empowers researchers to deliver high-quality training.
In the Training Committee, the strategic outlook and the concept of the Training activities are discussed and decided upon. It is composed of the leaders of the groups most involved in training activities at SIB, namely:
Article: Community-driven ELIXIR activities in single-cell omics. Czarnewski P, Mahfouz A, Calogero RA et al. Community-driven ELIXIR activities in single-cell omics [version 1; peer review: awaiting peer review]. F1000Research 2022, 11(ELIXIR):869
Article: Ten simple rules for good research practice. Simon Schwab, Perrine Janiaud, Michael Dayan, Valentin Amrhein, Radoslaw Panczak, Patricia M. Palagi, Lars G. Hemkens, Meike Ramon, Nicolas Rothen, Stephen Senn, Eva Furrer, Leonhard Held. PLoS Computational Biology, 2022 June 23.
Poster: Feedback analysis from in person and streamed SIB courses. Monique Zahn, Alessia Di Pietro, Valeria Di Cola, Wandrille Duchemin, Isabelle Dupanloup, Geert van Geest, Diana Marek, Grégoire Rossier, Frédéric Schütz, Patricia M. Palagi. 2021 July 12 - ISMB Conference
Article: ELIXIR‐EXCELERATE: establishing Europe's data infrastructure for the life science research of the future. Jennifer Harrow, John Hancock, Niklas Blomberg, Søren Brunak, Salvador Capella‐Gutierrez, Christine Durinx, Chris T Evelo, Carole Goble, Ivo Gut, Jon Ison, Thomas Keane, Brane Leskošek, Luděk Matyska, Johanna McEntyre, Célia Miguel, Arcadi Navarro, Steven Newhouse, Tommi Nyrönen, Patricia Palagi, Bengt Persson, Cyril Pommier, Jordi Rambla, Marco Roos, Gabriella Rustici, Andrew Smith, Alfonso Valencia, Celia van Gelder, Jiri Vondrasek, Nils Peder Willassen, Juan Arenas, Helen Parkinson, Robert D Finn, Sergi Beltran, Leslie Matalonga, Hannah Hurst, Paul Kersey, Ilkka Lappalainen, Pascal Kahlem, Gary Saunders, Sirarat Sarntivijai, Rachel Drysdale, Johnathan Tedds, Jeremy Lanfear. The EMBO Journal,40, 6, e107409, 2021.
Article: A framework to assess the quality and impact of bioinformatics training across ELIXIR. Kim T. Gurwitz, Prakash Singh Gaur, Louisa J. Bellis, Lee Larcombe, Eva Alloza, Balint Laszlo Balint, Alexander Botzki, Jure Dimec, Victoria Dominguez del Angel, Pedro L. Fernandes, Eija Korpelainen, Roland Krause, Mateusz Kuzak, Loredana Le Pera ,Brane Leskošek, Jessica M. Lindvall, Diana Marek, Paula A. Martinez, Tuur Muyldermans, Ståle Nygård, Patricia M. Palagi, Hedi Peterson, Fotis Psomopoulos, Vojtech Spiwok, Celia W. G. van Gelder, Allegra Via, Marko Vidak, Daniel Wibberg, Sarah L. Morgan, Gabriella Rustici. 2020 July 23.
Article: Ten simple rules for making training materials FAIR. Leyla Garcia, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi. 2020 May 21
Report: Report on training provided across the ELIXIR community. Attwood Terri, Ben-Avraham Daniel, Beard Niall, Dominguez del Angel Victoria, Fernandes Pedro, Gurwitz Kim, Kahlem Pascal, Korpelainen Eija, Leskošek Brane, Lindvall Jessica, Morgan Sarah, Nygard Stale, Palagi Patricia, Peterson Heidi, Rustici Gabriella, Sansone Susanna-A, Thurston Milo, van Gelder Celia, Via Allegra. 2019 August 23
Presentation: FAIR Training in ELIXIR Europe. Mateusz Kuzak, Leyla García Castro, Bérénice Batut, Ricardo Arcila, Niall Beard, Melissa Burke, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Kim Gurwitz, Pascal Kahlem, Paula Martinez, Sarah Morgan, Peter McQuilton, Patricia Palagi, Fotis Psomopoulos, Gabriella Rustici, Celia van Gelder. 2019 July 24.
Conference poster: GOBLET’s bioinformatics learning, education and training activities. Nicola Mulder, Teresa K. Attwood, Pamela Black, Marie-Claude Blatter, Cath Brooksbank, Pedro Fernandes, Patricia M. Palagi, Gabriella Rustici, Maria Victoria Schneider, Celia W. G. van Gelder. F1000Research, ISCB 2016 Jul.
Conference poster: The ELIXIR training platform: highlights and overview. Rita Hendricusdottir, Patricia M. Palagi, Celia W.G. van Gelder, Lee Larcombe, Eija Korpelainen, Brane Leskošek, Teresa K. Attwood, Sarah L. Morgan, Hedi Peterson, Alex Upton, Katrijn Vannerum, Allegra Via, Dimitris Kafetzopoulos, Martin Reczko, Victoria Dominguez del Angel, Vojtech Spiwok, Michal Linial, Ron Unger, Henriette Husum Bak-Jensen, Ståle Nygård, Pedro Fernandes, Sara Light, Gabriella Rustici, Susanna Repo, Andrew Smith, Chris Ponting, Niklas Blomberg. F1000Research, ELIXIR All Hands Meeting, 2016 Mar.
Article: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training Teresa K. Atwood, Erik Bongcam-Rudloff, Michelle E. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder, and the GOBLET Consortium. PLoS Computational Biology 04/2015; 11(4):e1004143. DOI:10.1371/journal.pcbi.1004143
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