What we do

In the Laboratory of Systems Biology and Genetics (LSBG), we use high-throughput sequencing, single cell genomics, microfluidics, and computational approaches:

  1. to decipher the regulatory code in Drosophila and mammals with a specific focus on mesenchymal stem cell function, adipose biology and gut immunity, and
  2. to examine how variations in this code affect molecular and organismal diversity.

In addition to our research interests, we are actively pursuing the development of new research tools and computational pipelines that enable a better characterization of gene regulatory networks.

Find out more about the Group’s activities

Main publications 2020

  • David F P A et al.
    ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses
    Nucleic Acids Research, 10.1093/nar/gkaa412
  • Dainese R et al.
    A parallelized, automated platform enabling individual or sequential ChIP of histone marks and transcription factors
    PNAS, 10.1073/pnas.1913261117
  • Frochaux M V et al.
    cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel
    Genome Biology, 10.1186/s13059-019-1912-z

Members

epfl

Bart Deplancke
Laboratory of Systems Biology and Genetics
EPFL, Lausanne
Group Webpage

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Domain(s) of activity:

  • Genes and genomes
  • Functional genomics
  • Gene regulatory network analysis
  • Gene regulation
  • GWAS
  • Human genetics
  • Machine learning
  • Microfluidics
  • Personalised medicine
  • Single-cell biology
  • Transcriptomics

Domain(s) of application:

  • Medicine and health

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