What we do

The group is active in the fields of comparative genomics and shotgun metagenomics. We study molecular evolution, develop approaches to genomics data analyses, and implement computational pipelines. We apply evolutionary models to digest sequencing data, and revise these models using the novel data. We study functional genomic elements on the basis of sequence variability among different species and within populations. Our interests range from arthropod genomics, including invertebrate vectors of human pathogens, to the evolution of viruses and clinical microbiology.

The group develops the OrthoDB tool.

Main publications 2019

  • Seppey M et al.
    LEMMI: A continuous benchmarking platform for metagenomics classifiers
    bioRxiv, https://doi.org/10.1101/507731
  • Manni M et al.
    The genome of the blind soil-dwelling and ancestrally wingless dipluran Campodea augens, a key reference hexapod for studying the emergence of insect innovations
    Genome Biol Evol, https://doi.org/10.1093/gbe/evz260
  • Rands CM et al.
    Comparative genomics groups phages of Negativicutes and classical Firmicutes despite different Gram-staining properties
    Environ Microbiol, https://doi.org/10.1111/1462-2920.14746

Find out more about the Group’s activities

Members

University geneva

Evgeny Zdobnov & Evgenia Kriventseva
Computational Evolutionary Genomics Group
University of Geneva
Group Webpage

Domain(s) of activity:

  • Genes and genomes
  • Benchmarking
  • Comparative genomics
  • Evolutionary biology
  • Functional genomics
  • Infectious diseases
  • Machine learning
  • Metagenomics
  • Personalised medicine
  • Phylogeny
  • Software engineering

Domain(s) of application:

  • Agriculture
  • Basic research
  • Medicine and health

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