What we do

The responsibility of the proteome informatics at the FCGZ is to evaluate and provide services to the mass spectrometry scientists at our center, ranging from sample annotation, data archiving, processing, analysis, visualization up to implementing sustainable and maintainable algorithmic solutions, statistics and downstream analysis. These activities also include consulting, teaching, and training for all the relevant tools for our colleagues and researchers.

Find out about the Group’s activities

Highlights 2020

rawR

The R package provides an interface for Thermo Fisher Scientific raw files branched from rawDiag. This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects.

Selected Publications 2020

Gehrig P. et al.
Gas-Phase Fragmentation of ADP-Ribosylated Peptides: Arginine-Specific Side-Chain Losses and Their Implication in Database Searches
ACS Publications, doi: 10.1021/jasms.0c00040

Nowak K. et al.
Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins
Nature, doi: 10.1038/s41467-020-18981-w

Panse C. et al.
Ultraviolet Photodissociation for Non-Target Screening-Based Identification of Organic Micro-Pollutants in Water Samples
MDPI, doi: 10.3390/molecules25184189

Rathinam M. et al.
Unraveling the proteomic changes involved in the resistance response of Cajanus platycarpus to herbivory by Helicoverpa armigera
Springer, doi: 10.1007/s00253-020-10787-6

Members

eth zurich

Christian Panse
Proteome Informatics
Group Webpage

Domain(s) of activity:

  • Core facility and competence centre
  • Biostatistics
  • Data management
  • Data mining
  • Data visualisation
  • Mass spectrometry
  • Protein interactions
  • Proteomics
  • Software engineering
  • Training
  • Workflows

Domain(s) of application:

  • Basic research

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