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  1. Home
  2. Vital-IT - Computational Biology

Vital-IT: Software-stack

{{ item.package }}
installed on {{ item.date }}

{{ item.summary }}
{{ item.category }} {{item.license}}
{{ item.url }}

To load this package, you need first to execute these commands:
module load {{item.installprefix}};

To unload the package, use:
module unload {{item.installprefix}};

To access the documentation of this container, execute this command:
singularity run-help {{item.installprefix}};

These commands are by default in $PATH

If you want to know if an R library is installed, try this command after having loaded the package:
R -e \'library("Library_name")\'
Library_name IS case sensitive !!!

If you want to know if a perl module is installed, try this command after having loaded the package:
perl -MModule::Name -e 1
Module::Name IS case sensitive !!!

If you want to know if a python module is installed, try this command after having loaded the package:
python -c "import Module_Name"
Module_Name IS case sensitive !!!

If you want to know if a python3 module is installed, try this command after having loaded the package:
python3 -c "import Module_Name"
Module_Name IS case sensitive !!!

If you want to know if a ruby gem/library is installed, try this command after having loaded the package:
ruby -e 'require Gem_Name'
Gem_Name IS case sensitive !!!

Commands:
{{ command }}

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The SIB Swiss Institute of Bioinformatics is an internationally recognized non-profit organization, dedicated to biological and biomedical data science. The institute contributes to keeping Switzerland at the forefront of innovation by fostering progress in biological research and enhancing health.

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