What we do

With a multidisciplinary team of scientists and technical staff, at Vital-IT we maintain a competence centre in bioinformatics and computational biology. Our infrastructure currently spreads across six institutions that maintain bio-technological platforms: SIB, the Universities of Geneva, Lausanne, Fribourg and Bern, and EPFL. At Vital-IT we enable scientists to access state-of-the-art computational infrastructure (processing, storage and archiving) as well as expertise in data analysis and algorithmic development.

Highlights 2017

Vital-IT has now become the Data Coordination Centre for several diabetes research activities within the Innovative Medicine Initiative (IMI-JU). Vital-IT has developed, with its partner the EMBO journal, an a novel data discovery tool recognized by its peers as an innovative platform in 2017. Vital-IT embeds over 2,400 bioinformatics-supporting software packages that enable reproducible science and data life cycle management. Vital-IT’s infrastructure supports several hundred research projects and maintains widely-used SIB resources, i.e. Swiss-Prot, MetaNetX, NeXtProt, OpenFlu, LipidX, SwissLipids, SwissDock, Swiss-Model and the ExPaSy portal. It also maintains more than 140 websites and services for its partner groups, with thousands of daily visitors.

Find out more about the Group’s activities

Main publications 2017

  • Schmid-Siegert E et al. Low number of fixed somatic mutations in a long-lived oak tree. Nat plants, 3 (2017) doi: 10.1038/s41477-017-0066-9
  • Solimena M et al. Systems biology of the IMIDIA biobank from organ donors and pancreatectomised patients defines a novel transcriptomic signature of islets from individuals with type 2 diabetes. Diabetologia (2017) doi: 10.1007/s00125-017-4500-3
  • Liechti R et al. SourceData: a semantic platform for curating and searching figures. Nat methods, 14 (2017) doi: 10.1038/nmeth.4471

Members

epfl lausanne

Mark Ibberson
Vital-IT
University of Lausanne
Group Webpage

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Domains of activity:

  • Core facility and competence centre
  • Data management
  • Data mining
  • Genome reconstruction
  • Machine learning
  • Mass spectroscopy
  • Next generation sequencing
  • Software engineering
  • Structural biology
  • Systems biology
  • Advanced software optimization

Domains of application:

  • Agriculture
  • Biosecurity
  • Ecology
  • Medicine and health
  • Basic research

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