Good practice in high-throughput experiments

Date 19 - 20 September 2022
Speaker(s) Michael Prummer, Eva Riegler and Franziska Singer
Fees *academic: 120 CHF   -   for-profit: 600 CHF
Cancellation deadline 5 Sep 2022
City Basel
*academic fee includes non for-profit organisations as well as unemployed participants at the time of application.

Overview

This course offers an overview of good practice in high-throughput experiments (e.g. next-generation sequencing or compound screening). Particularly we focus on pitfalls in the design of projects (e.g. too low sample size or sequencing coverage, or sample batches overlap with biological groups), how to successfully plan an experiment and how to deal with challenges, e.g. batch effects or confounding factors. The workshop addresses the experimental as well as the data analysis components through the complete life cycle of a project, from the initial idea all the way to publication.

Audience

Scientists with all backgrounds (biologists, biochemists, clinicians, bioinformaticians, etc) are welcome to join this course. In particular, those who are about to plan and execute an high-throughput experiment can benefit the most.

Learning objectives

At the end of the course participants should be able to:

  • Successfully design high-throughput experiments
  • Avoid common pitfalls
  • Detect and deal with challenges

Prerequisites

Knowledge / competencies

Basic theoretical knowledge in biology/biochemistry/computational analysis. No particular computational or wet lab experience is necessary.

Technical

Participants should bring their own internet-capable laptop or mobile device.

Application

The registration fees for academics are 120 CHF and 600 CHF for for-profit companies.

You will be informed by email of your registration confirmation. Upon reception of the confirmation email, participants will be asked to confirm attendance by paying the fees within 5 days.

Applications will close as soon as the places will be filled up. Deadline for registration and free-of-charge cancellation is set to 07/09/2022. Cancellation after this date will not be reimbursed. Please note that participation to SIB courses is subject to our general conditions.

Venue and Time

Basel, D-BSSE campus, Oppenheim, Seminar Room 1055/2.005.

The course will start at 10:00 and end around 16:00. Precise information will be provided to the participants on due time.

Additional information

Instructors:

Coordination: Patricia Palagi

A certificate of attendance will be delivered to the participants attending the workshop in full.

You are welcome to register to the SIB courses mailing list to be informed of all future courses and workshops, as well as all important deadlines using the form here.

Please note that participation in SIB courses is subject to our general conditions.

SIB abides by the ELIXIR Code of Conduct. Participants of SIB courses are also required to abide by the same code.

For more information, please contact training@sib.swiss.