Publications by SIB Members for the year 2016

Peer-reviewed journal articles

  • Abriata LA, Bovigny C, Dal Peraro M. Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server. BMC Bioinformatics 2016;17(1):242. (url)
  • Abriata LA, Spiga E, Peraro MD. Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics. Biophys J 2016;111(4):743-55. (url)
  • Ai N, Cai H, Solovan C, Baudis M. CNARA: reliability assessment for genomic copy number profiles. BMC Genomics 2016;17(1):799. (url)
  • Albino D, Civenni G, Dallavalle C, Roos M, Jahns H, Curti L, Rossi S, Pinton S, D'Ambrosio G, Sessa F, Hall J, Catapano CV, Carbone GM. Activation of the Lin28/let-7 Axis by Loss of ESE3/EHF Promotes a Tumorigenic and Stem-like Phenotype in Prostate Cancer. Cancer Res 2016;76(12):3629-43. (url)
  • Albino D, Civenni G, Rossi S, Mitra A, Catapano CV, Carbone GM. The ETS factor ESE3/EHF represses IL-6 preventing STAT3 activation and expansion of the prostate cancer stem-like compartment. Oncotarget 2016. (url)
  • Amorim CE, Hofer T, Ray N, Foll M, Ruiz-Linares A, Excoffier L. Long-distance dispersal suppresses introgression of local alleles during range expansions. Heredity (Edinb) 2016. (url)
  • Andersson A, Bluwstein A, Kumar N, Teloni F, Traenkle J, Baudis M, Altmeyer M, Hottiger MO. PKCalpha and HMGB1 antagonistically control hydrogen peroxide-induced poly-ADP-ribose formation. Nucleic Acids Res 2016;44(16):7630-45. (url)
  • Andreozzi S, Chakrabarti A, Soh KC, Burgard A, Yang TH, Van Dien S, Miskovic L, Hatzimanikatis V. Identification of metabolic engineering targets for the enhancement of 1,4-butanediol production in recombinant E. coli using large-scale kinetic models. Metab Eng 2016. (url)
  • Andreozzi S, Miskovic L, Hatzimanikatis V. iSCHRUNK - In Silico Approach to Characterization and Reduction of Uncertainty in the Kinetic Models of Genome-scale Metabolic Networks. Metab Eng 2016;33:158-68. (url)
  • Andritschke D, Dilling S, Emmenlauer M, Welz T, Schmich F, Misselwitz B, Ramo P, Rottner K, Kerkhoff E, Wada T, Penninger JM, Beerenwinkel N, Horvath P, Dehio C, Hardt WD. A Genome-Wide siRNA Screen Implicates Spire1/2 in SipA-Driven Salmonella Typhimurium Host Cell Invasion. PLoS One 2016;11(9):e0161965. (url)
  • Agerholm JS, Menzi F, McEvoy FJ, Jagannathan V, Drogemuller C. Lethal chondrodysplasia in a family of Holstein cattle is associated with a de novo splice site variant of COL2A1. BMC Vet Res 2016;12:100. (url)
  • Alcala N, Jensen JD, Telenti A, Vuilleumier S. The Genomic Signature of Population Reconnection Following Isolation: From Theory to HIV. G3 (Bethesda) 2016;6(1):107-20. (url)
  • Alexander HK, Lambert A, Stadler T. Quantifying Age-dependent Extinction from Species Phylogenies. Syst Biol 2016;65(1):35-50. (url)
  • Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, Lecompte O, von Mering C, Xenarios I, Sjolander K, Jensen LJ, Martin MJ, Muffato M, Quest for Orthologs c, Gabaldon T, Lewis SE, Thomas PD, Sonnhammer E, Dessimoz C. Standardized benchmarking in the quest for orthologs. Nat Methods 2016;13(5):425-30. (url)
  • Alves I, Arenas M, Currat M, Sramkova Hanulova A, Sousa VC, Ray N, Excoffier L. Long-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia. Mol Biol Evol 2016;33(4):946-58. (url)
  • An P, Penugonda S, Thorball CW, Bartha I, Goedert JJ, Donfield S, Buchbinder S, Binns-Roemer E, Kirk GD, Zhang W, Fellay J, Yu XF, Winkler CA. Role of APOBEC3F Gene Variation in HIV-1 Disease Progression and Pneumocystis Pneumonia. PLoS Genet 2016;12(3):e1005921. (url)
  • Artois J, Newman SH, Dhingra MS, Chaiban C, Linard C, Cattoli G, Monne I, Fusaro A, Xenarios I, Engler R, Liechti R, Kuznetsov D, Pham TL, Nguyen T, Pham VD, Castellan D, Von Dobschuetz S, Claes F, Dauphin G, Inui K, Gilbert M. Clade-level Spatial Modelling of HPAI H5N1 Dynamics in the Mekong Region Reveals New Patterns and Associations with Agro-Ecological Factors. Sci Rep 2016;6:30316. (url)
  • Asgari S, McLaren PJ, Peake J, Wong M, Wong R, Bartha I, Francis JR, Abarca K, Gelderman KA, Agyeman P, Aebi C, Berger C, Fellay J, Schlapbach LJ, Swiss Pediatric Sepsis S. Corrigendum: Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired Pseudomonas aeruginosa Sepsis. Front Immunol 2016;7:447. (url)
  • Audagnotto M, Lemmin T, Barducci A, Dal Peraro M. Effect of the Synaptic Plasma Membrane on the Stability of the Amyloid Precursor Protein Homodimer. J Phys Chem Lett 2016;7(18):3572-8. (url)
  • Bady P, Delorenzi M, Hegi ME. Sensitivity Analysis of the MGMT-STP27 Model and Impact of Genetic and Epigenetic Context to Predict the MGMT Methylation Status in Gliomas and Other Tumors. J Mol Diagn 2016;18(3):350-61. (url)
  • Baerenfaller K, Shu H, Hirsch-Hoffmann M, Futterer J, Opitz L, Rehrauer H, Hennig L, Gruissem W. Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis. Plant Cell Environ 2016;39(11):2557-2569. (url)
  • Balakirev ES, Anisimova M, Pavlyuchkov VA, Ayala FJ. DNA polymorphism and selection at the bindin locus in three Strongylocentrotus sp. (Echinoidea). BMC Genet 2016;17(1):66. (url)
  • Bank C, Matuszewski S, Hietpas RT, Jensen JD. On the (un)predictability of a large intragenic fitness landscape. Proc Natl Acad Sci U S A 2016. (url)
  • Bank C, Renzette N, Liu P, Matuszewski S, Shim H, Foll M, Bolon DN, Zeldovich KB, Kowalik TF, Finberg RW, Wang JP, Jensen JD. An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy. Evolution 2016;70(11):2470-2484. (url)
  • Barban N, Jansen R, de Vlaming R, Vaez A, Mandemakers JJ, Tropf FC, Shen X, Wilson JF, Chasman DI, Nolte IM, Tragante V, van der Laan SW, Perry JR, Kong A, Consortium B, Ahluwalia TS, Albrecht E, Yerges-Armstrong L, Atzmon G, Auro K, Ayers K, Bakshi A, Ben-Avraham D, Berger K, Bergman A, Bertram L, Bielak LF, Bjornsdottir G, Bonder MJ, Broer L, Bui M, Barbieri C, Cavadino A, Chavarro JE, Turman C, Concas MP, Cordell HJ, Davies G, Eibich P, Eriksson N, Esko T, Eriksson J, Falahi F, Felix JF, Fontana MA, Franke L, Gandin I, Gaskins AJ, Gieger C, Gunderson EP, Guo X, Hayward C, He C, Hofer E, Huang H, Joshi PK, Kanoni S, Karlsson R, Kiechl S, Kifley A, Kluttig A, Kraft P, Lagou V, Lecoeur C, Lahti J, Li-Gao R, Lind PA, Liu T, Makalic E, Mamasoula C, Matteson L, Mbarek H, McArdle PF, McMahon G, Meddens SF, Mihailov E, Miller M, Missmer SA, Monnereau C, van der Most PJ, Myhre R, Nalls MA, Nutile T, Kalafati IP, Porcu E, Prokopenko I, Rajan KB, Rich-Edwards J, Rietveld CA, Robino A, Rose LM, Rueedi R, Ryan KA, Saba Y, Schmidt D, Smith JA, Stolk L, Streeten E, Tonjes A, Thorleifsson G, Ulivi S, Wedenoja J, Wellmann J, Willeit P, Yao J, Yengo L, Zhao JH, Zhao W, Zhernakova DV, Amin N, Andrews H, Balkau B, Barzilai N, Bergmann S, Biino G, Bisgaard H, Bonnelykke K, Boomsma DI, Buring JE, Campbell H, Cappellani S, Ciullo M, Cox SR, Cucca F, Toniolo D, Davey-Smith G, Deary IJ, Dedoussis G, Deloukas P, van Duijn CM, de Geus EJ, Eriksson JG, Evans DA, Faul JD, Sala CF, Froguel P, Gasparini P, Girotto G, Grabe HJ, Greiser KH, Groenen PJ, de Haan HG, Haerting J, Harris TB, Heath AC, Heikkila K, Hofman A, Homuth G, Holliday EG, Hopper J, Hypponen E, Jacobsson B, Jaddoe VW, Johannesson M, Jugessur A, Kahonen M, Kajantie E, Kardia SL, Keavney B, Kolcic I, Koponen P, Kovacs P, Kronenberg F, Kutalik Z, La Bianca M, Lachance G, Iacono WG, Lai S, Lehtimaki T, Liewald DC, LifeLines Cohort S, Lindgren CM, Liu Y, Luben R, Lucht M, Luoto R, Magnus P, Magnusson PK, Martin NG, McGue M, McQuillan R, Medland SE, Meisinger C, Mellstrom D, Metspalu A, Traglia M, Milani L, Mitchell P, Montgomery GW, Mook-Kanamori D, de Mutsert R, Nohr EA, Ohlsson C, Olsen J, Ong KK, Paternoster L, Pattie A, Penninx BW, Perola M, Peyser PA, Pirastu M, Polasek O, Power C, Kaprio J, Raffel LJ, Raikkonen K, Raitakari O, Ridker PM, Ring SM, Roll K, Rudan I, Ruggiero D, Rujescu D, Salomaa V, Schlessinger D, Schmidt H, Schmidt R, Schupf N, Smit J, Sorice R, Spector TD, Starr JM, Stockl D, Strauch K, Stumvoll M, Swertz MA, Thorsteinsdottir U, Thurik AR, Timpson NJ, Tung JY, Uitterlinden AG, Vaccargiu S, Viikari J, Vitart V, Volzke H, Vollenweider P, Vuckovic D, Waage J, Wagner GG, Wang JJ, Wareham NJ, Weir DR, Willemsen G, Willeit J, Wright AF, Zondervan KT, Stefansson K, Krueger RF, Lee JJ, Benjamin DJ, Cesarini D, Koellinger PD, den Hoed M, Snieder H, Mills MC. Genome-wide analysis identifies 12 loci influencing human reproductive behavior. Nat Genet 2016. (url)
  • Barillari C, Ottoz DS, Fuentes-Serna JM, Ramakrishnan C, Rinn B, Rudolf F. openBIS ELN-LIMS: an open-source database for academic laboratories. Bioinformatics 2016;32(4):638-40. (url)
  • Bassani-Sternberg M, Gfeller D. Unsupervised HLA Peptidome Deconvolution Improves Ligand Prediction Accuracy and Predicts Cooperative Effects in Peptide-HLA Interactions. J Immunol 2016;197(6):2492-9. (url)
  • Beerenwinkel N, Greenman CD, Lagergren J. Computational Cancer Biology: An Evolutionary Perspective. PLoS Comput Biol 2016;12(2):e1004717. (url)
  • Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, Szuter EM, Hagan RW, Gujar H, Shukla JN, Zhu F, Mohan M, Nelson DR, Rosendale AJ, Derst C, Resnik V, Wernig S, Menegazzi P, Wegener C, Peschel N, Hendershot JM, Blenau W, Predel R, Johnston PR, Ioannidis P, Waterhouse RM, Nauen R, Schorn C, Ott MC, Maiwald F, Johnston JS, Gondhalekar AD, Scharf ME, Peterson BF, Raje KR, Hottel BA, Armisen D, Crumiere AJ, Refki PN, Santos ME, Sghaier E, Viala S, Khila A, Ahn SJ, Childers C, Lee CY, Lin H, Hughes DS, Duncan EJ, Murali SC, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Wheeler D, Panfilio KA, Vargas Jentzsch IM, Vargo EL, Booth W, Friedrich M, Weirauch MT, Anderson MA, Jones JW, Mittapalli O, Zhao C, Zhou JJ, Evans JD, Attardo GM, Robertson HM, Zdobnov EM, Ribeiro JM, Gibbs RA, Werren JH, Palli SR, Schal C, Richards S. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nat Commun 2016;7:10165. (url)
  • Beerenwinkel N, Greenman CD, Lagergren J. Computational Cancer Biology: An Evolutionary Perspective. PLoS Comput Biol 2016;12(2):e1004717. (url)
  • Bernasconi E, Gaudio E, Kwee I, Bertoni F. Assessment of the Antiproliferative Activity of a BET Bromodomain Inhibitor as Single Agent and in Combination in Non-Hodgkin Lymphoma Cell Lines. Methods Mol Biol 2016;1436:305-12. (url)
  • Betz-Stablein BD, Topfer A, Littlejohn M, Yuen L, Colledge D, Sozzi V, Angus P, Thompson A, Revill P, Beerenwinkel N, Warner N, Luciani F. Single-Molecule Sequencing Reveals Complex Genome Variation of Hepatitis B Virus during 15 Years of Chronic Infection following Liver Transplantation. J Virol 2016;90(16):7171-83. (url)
  • Bilbao A, Lisacek F, Hopfgartner G. Dedicated Software Enhancing Data-independent Acquisition Methods in Mass Spectrometry. Chimia (Aarau) 2016;70(4):293. (url)
  • Bischofberger M, Iacovache I, Boss D, Naef F, van der Goot FG, Molina N. Revealing Assembly of a Pore-Forming Complex Using Single-Cell Kinetic Analysis and Modeling. Biophys J 2016;110(7):1574-81. (url)
  • Boi M, Todaro M, Vurchio V, Yang SN, Moon J, Kwee I, Rinaldi A, Pan H, Crescenzo R, Cheng M, Cerchietti L, Elemento O, Riveiro ME, Cvitkovic E, Bertoni F, Inghirami G, Malignancies AxCG-DTMoL. Therapeutic efficacy of the bromodomain inhibitor OTX015/MK-8628 in ALK-positive anaplastic large cell lymphoma: an alternative modality to overcome resistant phenotypes. Oncotarget 2016. (url)
  • Bonilla X, Parmentier L, King B, Bezrukov F, Kaya G, Zoete V, Seplyarskiy VB, Sharpe HJ, McKee T, Letourneau A, Ribaux PG, Popadin K, Basset-Seguin N, Ben Chaabene R, Santoni FA, Andrianova MA, Guipponi M, Garieri M, Verdan C, Grosdemange K, Sumara O, Eilers M, Aifantis I, Michielin O, de Sauvage FJ, Antonarakis SE, Nikolaev SI. Genomic analysis identifies new drivers and progression pathways in skin basal cell carcinoma. Nat Genet 2016;48(4):398-406. (url)
  • Boutet E, Lieberherr D, Tognolli M, Schneider M, Bansal P, Bridge AJ, Poux S, Bougueleret L, Xenarios I. UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. Methods Mol Biol 2016;1374:23-54. (url)
  • Breda J, Rzepiela AJ, Gumienny R, van Nimwegen E, Zavolan M. Corrigendum to "Quantifying the strength of miRNA-target interactions" [Methods (2015) 90-99]. Methods 2016;104:204-205. (url)
  • Bron S, Henry L, Faes-Van't Hull E, Turrini R, Vanhecke D, Guex N, Ifticene-Treboux A, Marina Iancu E, Semilietof A, Rufer N, Lehr HA, Xenarios I, Coukos G, Delaloye JF, Doucey MA. TIE-2-expressing monocytes are lymphangiogenic and associate specifically with lymphatics of human breast cancer. Oncoimmunology 2016;5(2):e1073882. (url)
  • Broushaki F, Thomas MG, Link V, Lopez S, van Dorp L, Kirsanow K, Hofmanova Z, Diekmann Y, Cassidy LM, Diez-del-Molino D, Kousathanas A, Sell C, Robson HK, Martiniano R, Blocher J, Scheu A, Kreutzer S, Bollongino R, Bobo D, Davoudi H, Munoz O, Currat M, Abdi K, Biglari F, Craig OE, Bradley DG, Shennan S, Veeramah KR, Mashkour M, Wegmann D, Hellenthal G, Burger J. Early Neolithic genomes from the eastern Fertile Crescent. Science 2016;353(6298):499-503. (url)
  • Buckleton J, Curran J, Goudet J, Taylor D, Thiery A, Weir BS. Population-specific FST values for forensic STR markers: A worldwide survey. Forensic Sci Int Genet 2016;23:91-100. (url)
  • Burger A, Lindsay H, Felker A, Hess C, Anders C, Chiavacci E, Zaugg J, Weber LM, Catena R, Jinek M, Robinson MD, Mosimann C. Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes. Development 2016;143(11):2025-37. (url)
  • Burri R, Antoniazza S, Gaigher A, Ducrest AL, Simon C, European Barn Owl N, Fumagalli L, Goudet J, Roulin A. The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean. Evolution 2016;70(1):140-53. (url)
  • Burri A, Marinova Z, Robinson MD, Kuhnel B, Waldenberger M, Wahl S, Kunze S, Gieger C, Livshits G, Williams F. Are Epigenetic Factors Implicated in Chronic Widespread Pain? PLoS One 2016;11(11):e0165548. (url)
  • Cattin S, Fellay B, Pradervand S, Trojan A, Ruhstaller T, Ruegg C, Furstenberger G. Bevacizumab specifically decreases elevated levels of circulating KIT+CD11b+ cells and IL-10 in metastatic breast cancer patients. Oncotarget 2016;7(10):11137-50. (url)
  • Chen GB, Lee SH, Robinson MR, Trzaskowski M, Zhu ZX, Winkler TW, Day FR, Croteau-Chonka DC, Wood AR, Locke AE, Kutalik Z, Loos RJ, Frayling TM, Hirschhorn JN, Yang J, Wray NR, Genetic Investigation of Anthropometric Traits C, Visscher PM. Across-cohort QC analyses of GWAS summary statistics from complex traits. Eur J Hum Genet 2016. (url)
  • Christe C, Stolting KN, Bresadola L, Fussi B, Heinze B, Wegmann D, Lexer C. Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F fertility and recurrent gene flow. Mol Ecol 2016. (url)
  • Christensen LL, True K, Hamilton MP, Nielsen MM, Damas ND, Damgaard CK, Ongen H, Dermitzakis E, Bramsen JB, Pedersen JS, Lund AH, Vang S, Stribolt K, Madsen MR, Laurberg S, McGuire SE, Orntoft TF, Andersen CL. SNHG16 is regulated by the Wnt pathway in colorectal cancer and affects genes involved in lipid metabolism. Mol Oncol 2016;10(8):1266-82. (url)
  • Cigliola V, Populaire C, Pierri CL, Deutsch S, Haefliger JA, Fadista J, Lyssenko V, Groop L, Rueedi R, Thorel F, Herrera PL, Meda P. A Variant of GJD2, Encoding for Connexin 36, Alters the Function of Insulin Producing beta-Cells. PLoS One 2016;11(3):e0150880. (url)
  • Civenni G, Longoni N, Costales P, Dallavalle C, Garcia Inclan C, Albino D, Nunez LE, Moris F, Carbone GM, Catapano CV. EC-70124, a novel glycosylated indolocarbazole multi-kinase inhibitor, reverts tumorigenic and stem cell properties in prostate cancer by inhibiting STAT3 and NF-kappaB. Mol Cancer Ther 2016. (url)
  • Colaianna M, Ilmjarv S, Peterson H, Kern I, Julien S, Baquie M, Pallocca G, Bosgra S, Sachinidis A, Hengstler JG, Leist M, Krause KH. Fingerprinting of neurotoxic compounds using a mouse embryonic stem cell dual luminescence reporter assay. Arch Toxicol 2016. (url)
  • Constantinescu S, Szczurek E, Mohammadi P, Rahnenfuhrer J, Beerenwinkel N. TiMEx: a waiting time model for mutually exclusive cancer alterations. Bioinformatics 2016;32(7):968-75. (url)
  • Crespo I, Doucey MA, Xenarios I. Social networks help to infer causality in the tumor microenvironment. BMC Res Notes 2016;9:168. (url)
  • Cordey S, Brito F, Vu DL, Turin L, Kilowoko M, Kyungu E, Genton B, Zdobnov EM, D'Acremont V, Kaiser L. Astrovirus VA1 identified by next-generation sequencing in a nasopharyngeal specimen of a febrile Tanzanian child with acute respiratory disease of unknown etiology. Emerg Microbes Infect 2016;5(7):e67. (url)
  • Cordey S, Vu DL, Schibler M, L'Huillier AG, Brito F, Docquier M, Posfay-Barbe KM, Petty TJ, Turin L, Zdobnov EM, Kaiser L. Astrovirus MLB2, a New Gastroenteric Virus Associated with Meningitis and Disseminated Infection. Emerg Infect Dis 2016;22(5):846-53. (url)
  • Crippa S, Nemir M, Ounzain S, Ibberson M, Berthonneche C, Sarre A, Boisset G, Maison D, Harshman K, Xenarios I, Diviani D, Schorderet D, Pedrazzini T. Comparative transcriptome profiling of the injured zebrafish and mouse hearts identifies miRNA-dependent repair pathways. Cardiovasc Res 2016;110(1):73-84. (url)
  • Cristea S, Kuipers J, Beerenwinkel N. pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression. Research in Computational Molecular Biology 2016;9649(Lecture Notes in Computer Science):65-82. (url)
  • Daina A, Zoete V. A BOILED-Egg To Predict Gastrointestinal Absorption and Brain Penetration of Small Molecules. ChemMedChem 2016;11(11):1117-21. (url)
  • Degueurce G, D'Errico I, Pich C, Ibberson M, Schutz F, Montagner A, Sgandurra M, Mury L, Jafari P, Boda A, Meunier J, Rezzonico R, Brembilla NC, Hohl D, Kolios A, Hofbauer G, Xenarios I, Michalik L. Identification of a novel PPARbeta/delta/miR-21-3p axis in UV-induced skin inflammation. EMBO Mol Med 2016;8(8):919-36. (url)
  • Delaleu N, Mydel P, Brun JG, Jonsson MV, Alimonti A, Jonsson R. Sjogren's syndrome patients with ectopic germinal centers present with a distinct salivary proteome. Rheumatology (Oxford) 2016;55(6):1127-37. (url)
  • de Manuel M, Kuhlwilm M, Frandsen P, Sousa VC, Desai T, Prado-Martinez J, Hernandez-Rodriguez J, Dupanloup I, Lao O, Hallast P, Schmidt JM, Heredia-Genestar JM, Benazzo A, Barbujani G, Peter BM, Kuderna LF, Casals F, Angedakin S, Arandjelovic M, Boesch C, Kuhl H, Vigilant L, Langergraber K, Novembre J, Gut M, Gut I, Navarro A, Carlsen F, Andres AM, Siegismund HR, Scally A, Excoffier L, Tyler-Smith C, Castellano S, Xue Y, Hvilsom C, Marques-Bonet T. Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science 2016;354(6311):477-481. (url)
  • Deplancke B, Alpern D, Gardeux V. The Genetics of Transcription Factor DNA Binding Variation. Cell 2016;166(3):538-54. (url)
  • Devalla HD, Gelinas R, Aburawi EH, Beqqali A, Goyette P, Freund C, Chaix MA, Tadros R, Jiang H, Le Bechec A, Monshouwer-Kloots JJ, Zwetsloot T, Kosmidis G, Latour F, Alikashani A, Hoekstra M, Schlaepfer J, Mummery CL, Stevenson B, Kutalik Z, de Vries AA, Rivard L, Wilde AA, Talajic M, Verkerk AO, Al-Gazali L, Rioux JD, Bhuiyan ZA, Passier R. TECRL, a new life-threatening inherited arrhythmia gene associated with overlapping clinical features of both LQTS and CPVT. EMBO Mol Med 2016. (url)
  • Dhingra MS, Artois J, Robinson TP, Linard C, Chaiban C, Xenarios I, Engler R, Liechti R, Kuznetsov D, Xiao X, Von Dobschuetz S, Claes F, Newman SH, Dauphin G, Gilbert M. Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation. Elife 2016;5. (url)
  • Di Mitri D, Alimonti A. Non-Cell-Autonomous Regulation of Cellular Senescence in Cancer. Trends Cell Biol 2016;26(3):215-26. (url)
  • Di-Poï N, Milinkovitch MC. The anatomical placode in reptile scale morphogenesis indicates shared ancestry among skin appendages in amniotes. Science Advances 2016;2(6):e1600708. (url)
  • Doelle M, Linder KE, Boche J, Jagannathan V, Leeb T, Linek M. Initial characterization of stiff skin-like syndrome in West Highland white terriers. Vet Dermatol 2016;27(3):210-e53. (url)
  • Dolowschiak T, Mueller AA, Pisan LJ, Feigelman R, Felmy B, Sellin ME, Namineni S, Nguyen BD, Wotzka SY, Heikenwalder M, von Mering C, Mueller C, Hardt WD. IFN-gamma Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection. Cell Host Microbe 2016;20(2):238-49. (url)
  • Dorier J, Crespo I, Niknejad A, Liechti R, Ebeling M, Xenarios I. Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method. BMC Bioinformatics 2016;17(1):410. (url)
  • Dousse A, Junier T, Zdobnov EM. CEGA-a catalog of conserved elements from genomic alignments. Nucleic Acids Res 2016;44(D1):D96-D100. (url)
  • Druce M, Hulo C, Masson P, Sommer P, Xenarios I, Le Mercier P, De Oliveira T. Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource. Database (Oxford) 2016;2016. (url)
  • Drummond AJ, Stadler T. Bayesian phylogenetic estimation of fossil ages. Philos Trans R Soc Lond B Biol Sci 2016;371(1699). (url)
  • Dummer R, Siano M, Hunger RE, Lindenblatt N, Braun R, Michielin O, Mihic-Probst D, von Moos R, Najafi Y, Guckenberger M, Arnold A. The updated Swiss guidelines 2016 for the treatment and follow-up of cutaneous melanoma. Swiss Med Wkly 2016;146:w14279. (url)
  • du Plessis L, Leventhal GE, Bonhoeffer S. How Good Are Statistical Models at Approximating Complex Fitness Landscapes? Mol Biol Evol 2016;33(9):2454-68. (url)
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Other articles

  • Baillie Gerritsen V. Tenacious memory. Protein Spotlight 2016 (185). (url)
  • Baillie Gerritsen V. Seeing red. Protein Spotlight 2016 (184). (url)
  • Baillie Gerritsen V. You want it darker. Protein Spotlight 2016 (183). (url)
  • Baillie Gerritsen V. A loosening of habits. Protein Spotlight 2016 (182). (url)
  • Baillie Gerritsen V. Of plastic and men. Protein Spotlight 2016 (181). (url)
  • Baillie Gerritsen V. On releasing tension. Protein Spotlight 2016 (180). (url)
  • Baillie Gerritsen V. The shape of harm. Protein Spotlight 2016 (179). (url)
  • Baillie Gerritsen V. A tighter mesh. Protein Spotlight 2016 (178). (url)
  • Baillie Gerritsen V. The art of biocuration. Protein Spotlight 2016 (177). (url)
  • Baillie Gerritsen V. Discerning change. Protein Spotlight 2016 (176). (url)
  • Baillie Gerritsen V. Shaping life. Protein Spotlight 2016 (175). (url)

Publications 2015